Just looked at the pics, and as someone else said the big-end bush looks very worn, you may need a new con-rod too.
Also have you checked the pinch yet? If the piston and sleave aer worn it may be more economical to get a good second hand engine or even a new one.
As to your original problem, check the tension of the clutch springs, if they are weak then this would cause the clutch to drag at a RPM lower than idle speed and would require a high idle gap and cause difficulty starting and tuning LSN - i know from experiencing the same thing on one of my engines.
Also if the clutch shoes were very easy to fit, this could point to weak springs too, i fitted 1.1mm HPI springs, and it makes a big difference when it comes to re-fitting compared to weak 0.8mm springs (and acceleration on high grip surface, but that's another topic)